Sangam: A Confluence of Knowledge Streams

Compositional modelling of immune response and virus transmission dynamics – Supplementary data

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dc.contributor MRC - Medical Research Council
dc.contributor Waites, William
dc.creator Waites, William
dc.date 2021-11-03T09:35:53Z
dc.date 2021-11-03T09:35:53Z
dc.date.accessioned 2023-02-17T20:54:20Z
dc.date.available 2023-02-17T20:54:20Z
dc.identifier Waites, William. (2021). Compositional modelling of immune response and virus transmission dynamics – Supplementary data, [dataset]. University of Edinburgh. School of Informatics. https://doi.org/10.7488/ds/3162.
dc.identifier https://hdl.handle.net/10283/4056
dc.identifier https://doi.org/10.7488/ds/3162
dc.identifier.uri http://localhost:8080/xmlui/handle/CUHPOERS/244216
dc.description This repository contains calibration and simulation data accompanying the paper of the same title about the interaction of the adaptive immune response and transmission of SARS-CoV-2. All data is reproducible from the software at https://git.sr.ht/~wwaites/immune-transmission however reproduction is computationally expensive. For this reason the data is made available separately here.
dc.description This dataset contains three types of files. Calibration data (.db) are SQLite databases in the format of the PyABC programme. Sampled trajectories from the model (.h5) are in HDF5 format. Post-processed data (.tsv) is in tab-separated value format. These are described in detail in the README file in the source code repository https://git.sr.ht/~wwaites/immune-transmission.
dc.format text/tab-separated-values
dc.format text/tab-separated-values
dc.format text/tab-separated-values
dc.format text/csv
dc.format text/tab-separated-values
dc.format text/tab-separated-values
dc.format text/tab-separated-values
dc.format text/tab-separated-values
dc.format application/octet-stream
dc.format application/octet-stream
dc.format application/octet-stream
dc.format text/tab-separated-values
dc.format text/tab-separated-values
dc.format text/tab-separated-values
dc.format text/tab-separated-values
dc.format application/octet-stream
dc.format application/octet-stream
dc.language eng
dc.publisher University of Edinburgh. School of Informatics
dc.rights Creative Commons Attribution 4.0 International Public License
dc.source https://www.thelancet.com/journals/lancet/article/PIIS0140-6736(20)31484-7/fulltext
dc.source https://doi.org/10.1186/s12916-021-01982-x
dc.subject epidemics
dc.subject immune response
dc.subject process calculi
dc.subject multi-scale modelling
dc.subject COVID-19
dc.subject Medicine and Dentistry
dc.title Compositional modelling of immune response and virus transmission dynamics – Supplementary data
dc.type dataset


Files in this item

Files Size Format View
antibody-count.tsv 3.943Kb text/tab-separated-values View/Open
dyn-immune-response.tsv 10.71Kb text/tab-separated-values View/Open
dyn-viral-load.tsv 48.33Kb text/tab-separated-values View/Open
empirical_samples_pcr_detection.csv 1.437Kb text/csv View/Open
epidemic.tsv 7.778Kb text/tab-separated-values View/Open
epidemic-avg.tsv 4.686Kb text/tab-separated-values View/Open
epidemic-std.tsv 7.299Kb text/tab-separated-values View/Open
immune.db 2.085Gb application/octet-stream View/Open
immune.h5 1.090Mb application/octet-stream View/Open
immune-response.tsv 2.708Kb text/tab-separated-values View/Open
sym.db 65.91Mb application/octet-stream View/Open
symptoms.tsv 871bytes text/tab-separated-values View/Open
symptoms-avg.tsv 705bytes text/tab-separated-values View/Open
symptoms-std.tsv 702bytes text/tab-separated-values View/Open
viral-load.tsv 4.501Kb text/tab-separated-values View/Open
xmit.db 69.70Mb application/octet-stream View/Open
xmit.h5 10.60Mb application/octet-stream View/Open

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