Tropical coral reefs are increasingly threatened due to global warming. Corals live within a narrow thermal threshold making them one of the most sensitive species to changes in temperature. Recent warming events on the Great Barrier Reef (GBR) (2016, 2017, 2020) have caused mass coral mortality on approximately 30% of the reef (Bozec et al., 2020; Hughes, Kerry et al., 2018). This research focuses on the development and implementation of a 1-D semi-dynamic downscaling method to improve climate projections on the GBR. Coral stress metrics are used to provide detailed projections on the magnitude and frequency of warming for four socio-economic pathways (SSP) under the 6th phase of the Climate Model Intercomparison Project. Following a chapter on methods and model validation, the results in chapter 3 reveal the importance of adhering to the lowest possible emissions trajectory which limits warming to 1.5°C by the end of the century. This scenario keeps projected warming to slightly above current conditions. Under the higher emissions trajectories (~4°C and ~5°C of global average warming) coral stress metrics quadruple present-day warming conditions which would result in annual mass coral mortality events by 2080. In chapter 4, climate refugia have been identified from present-day conditions based on downscaled surface temperature outputs in agreement with observations. The lower emissions trajectories maintain these locations as refugia while the higher emissions trajectories reveal the loss of these increasingly valuable locations. Areas of climate refugia can be attributed to tidal and wind energy fluctuations providing relief from warming. However, this advantage does not persist after global warming exceeds ~3°C. Refugia are more likely to persist in the northern GBR under increased warming even though recent evidence suggests there are fewer refugia in this region. Atmospheric spatial patterns on the GBR under warming above ~3° C reveal a change in wind and shortwave radiation patterns driving a loss in the identified climate refugia locations. Lastly, stratification was tested in chapter 5 to determine if increases in stratification could provide thermal relief to bottom temperature waters from 0-50 m under increased warming into the future using downscaled bottom temperature projections. Chapter 5 results demonstrate that warming influences bottom temperatures of stratified locations, showing little support for deeper reefs to act as a climate refuge. The temporal, spatial, and bottom temperature analysis of downscaled climate projections provides insight into the consequences of a warming planet for the GBR and can be used to inform management and policy decisions to protect coral reefs.